InTheLoop | 01.26.2009
The weekly newsletter for Berkeley Lab Computing Sciences
January 26, 2009
LBNL and NERSC to Collaborate with Korean Institute
LBNL and NERSC have signed a Memorandum of Understanding (MOU) to collaborate with the Korea Institute of Science and Technology Information (KISTI), including its Supercomputing Center, e-Science Division, and Computing and Networking Resources Division. Specific intentions include:
- Pursue collaboration on the optimization of operations and performance of high performance computing and networking (HPCN) facilities, including KREONET/GLORIAD and large scale data storage.
- Pursue collaboration on the development of the HPCN, e-Science and grid computing software (both infrastructure and applications related), the development of computational science and engineering applications, and the sharing of expertise in the optimization of applications performance on HPCN systems.
- Provide mutual access to facilities for the purposes of evaluating systems and applications performance.
- Encourage collaboration and cooperation of projects involving scientists, engineers and personnel from the user communities associated with each organization.
- Offer an employee exchange opportunity with the aim of sharing and furthering the scientific and technical know-how of both institutions.
David Bailey’s Research Featured in Spektrum der Wissenschaft
The work of CRD Chief Technologist David H. Bailey was recently featured in Spektrum der Wissenschaft, the German equivalent of Scientific American. In the January 2009 issue, an article entitled “Der Computer als Formelentdecker” (“The Computer as Formula Discoverer”) by Spektrum editor Christoph Pöppe summarizes recent developments in experimental mathematics. The abstract of the article reads (translated):
A computer program can discover, through targeted searches, what a numerically calculated value “actually” is. But mathematicians are not unemployed; on the contrary, by using the program, numerous relationships can be found that need proving.
A translation of the paper will appear soon on the website Papers on Experimental Mathematics.
German Researchers Will Visit LBNL on Wednesday
Leading researchers from Karlsruhe Institute of Technology (KIT) in Germany will visit Berkeley Lab Computing Sciences on Wednesday, January 28, as part of a week-long visit to California to strengthen existing partnerships and establish new research collaborations. The Berkeley Lab visit will include an exchange of information on research at both institutions, along with discussions of challenges of large-scale data management and analysis, and energy efficiency problems in future HPC environments. The KIT researchers will also visit other research centers, including UC Berkeley, CITRIS, HP, IBM, Google, and Stanford University.
UC Libraries and Springer Agree on Open Access Publishing
The University of California libraries and Springer Science+Business Media have concluded a groundbreaking experimental agreement to support open access publishing by UC authors. The arrangement is part of the journals license negotiated by the California Digital Library on behalf of the 10 campuses of the University of California, and is the first large-scale open access experiment of its type undertaken with a major commercial publisher in North America. Details are in a news release.
Future Technologies Group Has Opening for Postdoc
The Future Technologies Group in CRD has an opening for a Computer Science Postdoctoral Fellow who will participate in research projects to develop, analyze, and optimize performance of accelerator modeling codes on HPC computer systems and applications. This project will involve some of the following activities: analysis and optimization of serial and parallel application programs; benchmarking these codes on systems from single cores to large scale HPC systems; assisting the development of auto-tuning software components of interest to this project; and assisting domain scientists in developing application codes. Job details can be found here.
NERSC Seeks High Performance Computing Technician
The Lead High Performance Computing Technician will provide broad technical skills to the Computer Operations and ESnet Support (CONS) group at NERSC. Professionally skilled in all high performance computing areas, including computational, networking, cybersecurity and storage systems, the Lead Technician will act as a source of technical information involving all areas and develop procedures for review by the CONS Group Lead. Job details can be found here.
“Applications of Parallel Computers” Course Offers Webcasts
The UC Berkeley course CS267/EngC233, “Applications of Parallel Computers,” taught by Jim Demmel and Horst Simon on Mondays and Wednesdays from 9:00–10:30 am, is offering live webcasts at <mms://media.citris.berkeley.edu/cs267> (active during lectures only).
Cray User Group Extends Deadline for Abstracts
The Cray User Group (CUG) 2009 conference, “Compute the Future,” will be held May 4–7 at the Omni Hotel in Atlanta, Georgia. The program committee has extended the Call for Papers and the deadline for abstracts to Friday, January 30. Participants are encouraged to submit papers in the areas of Applications & Programming Environments, User Services, Systems Support, and Legacy Systems. On May 6, during the General Session, CUG will recognize the conference’s Best Paper.
SC09 Issues Call for Participation
The SC09 conference will be held November 14–20, 2009 at the Oregon Convention Center in Portland. Although registration will not be open until June, the call for participation has been posted. Here’s a list of important dates, including submission deadlines:
PAPERS/GORDON BELL PRIZE
Abstracts Due: Friday, April 3, 2009
Papers Due: Monday, April 6, 2009
Notification: Monday, June 29, 2009
Due: Monday, April 6, 20208
Notification: Monday, June 29, 2009
Due: Monday, July 27, 2009
Notification: Monday, August 17, 2009
Due: Monday, July 27, 2009
Notification: Monday, August 17, 2009
SIDNEY FERNBACH MEMORIAL AWARD/SEYMOUR CRAY COMPUTER SCIENCE AND ENGINEERING AWARD
Nominations Open: Friday, May 1, 2009
Nominations Due: Wednesday, July 1, 2009
STUDENT VOLUNTEERS/BROADER ENGAGEMENT
Applications Due: Monday, August 3, 2009
Notification: Monday, September 7, 2009
Applications for the on-site program due: Monday, June 1, 2009
Travel Funding Available for Tapia and Hopper Conferences
Through the generous support of Horst Simon, the Computing Sciences Diversity Working Group has travel funding available to sponsor a few employees to attend the Richard Tapia Celebration of Diversity in Computing (Portland, April 1–4, 2009) and the Grace Hopper Celebration of Women in Computing (Tucson, Sept. 30–Oct. 3, 2009). If you are interested in attending one of these conferences, please send a note to email@example.com with the following contents: Your name, your group and department, the conference name, and a paragraph describing why you would like to attend the conference. The deadline for submitting the above information is February 9, 2009.
Registration has just opened for the 2009 Richard Tapia Celebration of Diversity in Computing Conference. Early bird registration, with discounted registration fees, closes on March 1, 2009. March 1 is also the date by which hotel reservations should be confirmed.
The conference theme of “Intellect, Initiative, Insight, and Innovation” will be featured in all aspects of the event, including papers, panels, workshops, posters, Birds-of-a-Feather sessions, a Doctoral Consortium, and a Robotics Competition. While the Tapia Celebration is centered on an extensive technical program, the conference also provides a supportive networking environment for under-represented groups across the broad range of computing and information technology.
NSF and UCB Offer Research Experiences for Undergraduates
The National Science Foundation funds a large number of Research Opportunities for Undergraduate students through its REU Sites program. An REU Site consists of a group of ten or so undergraduates who work in the research programs of the host institution. Each student is associated with a specific research project, where he/she works closely with the faculty and other researchers. Students are granted stipends and, in many cases, assistance with housing and travel. Students must contact the individual sites for information and application materials.
The UC Berkeley Department of Electrical Engineering and Computer Sciences is an REU Site with its SUPERB-CSIS program (Summer Undergraduate Program in Engineering Research at Berkeley—Computer Science in the Interest of Society). The research focus of SUPERB-CSIS is computer science in the context of solving societal problems, including health, national security, and technology for underdeveloped countries.
Feb. 15 Application Deadline for CRA-W Grad Cohort for Women
CRA-W is announcing the formation of the Sixth Grad Cohort for Women. Cohort activities will kick off with a workshop March 27-28, 2009 in San Mateo, CA. This workshop is the cornerstone of CRA-W's Grad Cohort Program to increase the ranks of senior women in computing by building and mentoring nationwide communities of women through their graduate studies. Through this workshop, students will be able to build mentoring relationships and develop peer networks that will form the basis for ongoing activities during their graduate careers. Travel expenses, meals and lodging will be provided for students chosen to participate in this program. The application deadline is February 15, 2009.
International Data Challenge Competition Announced
On January 16, a new, international competition called the Digging into Data Challenge was announced by four leading research agencies: the Joint Information Systems Committee (JISC) from the United Kingdom, the National Endowment for the Humanities (NEH) and the National Science Foundation (NSF) from the United States, and the Social Sciences and Humanities Research Council (SSHRC) from Canada.
The idea behind the Digging into Data Challenge is to answer the question “What do you do with a million books?” Or a million pages of newspaper? Or a million photographs of artwork? That is, how does the notion of scale affect humanities and social science research? Now that scholars have access to huge repositories of digitized data — far more than they could read in a lifetime — what does that mean for research?
Applicants will form international teams from at least two of the participating countries. Winning teams will receive grants from two or more of the funding agencies and, one year later, will be invited to present their work at a special conference. These teams, which may be composed of scholars and scientists, will be asked to demonstrate how data mining and data analysis tools currently used in the sciences can improve humanities and social science scholarship. The hope of this competition is that these projects will serve as exemplars to the field and encourage new, international partnerships among scholars, computer scientists, information scientists, librarians and others.
This Week’s Computing Sciences Seminars
Challenges of High Performance Computing in Structural Industrial Finite Element Analysis
Wednesday, Jan. 28, 11:00 am–noon, 380 Soda Hall, UC Berkeley
Louis Komzsik, Chief Numerical Analyst, Office of Architecture and Technology, Siemens PLM Software
The new millennium brought significant new challenges to high performance computing in industrial finite element analysis. Millions of node points and tens of millions of degrees of freedom are now commonplace. These are mainly results of the recent significant advancements in computer aided design tools and the increased use of analysis early in the design phase. The industry application focus has been extended from simply verifying structural integrity to product life-cycle simulation. The outcome of this is an increased use of coupled analyses yielding more difficult computational problems.
A third challenge is presented by the radical paradigm shift in the computational environment. Most of the modeling activities in the industry are now executed on personal computers, and there is a desire to do the analysis on clusters of such platforms as well.
The computational solutions to these challenges are also rather complex. The first challenge is addressed by partitioned solution of linear systems and eigenvalue problems. The second challenge gave a boost to symmetric reformulation and reduced order techniques. The third challenge resulted in the emergence of distributed memory parallel computational strategies for clusters of processors.
The presentation will review the computational challenges and present commercially useful high performance computing solutions.
Beyond Transistor Scaling: New Devices for Ultra-Low-Energy Information Processing
Wednesday, Jan. 28, noon–1:00 pm, 290 Hearst Memorial Mining Bldg., UC Berkeley
Tsu-Jae King Liu, Professor of Electrical Engineering and Computer Sciences, UC Berkeley
Online live broadcast: mms://media.citris.berkeley.edu/webcast
The rapid growth of the semiconductor industry over the past four decades was enabled by the steady miniaturization of the transistor with each new generation of CMOS technology, which provided for continual improvements in integrated-circuit performance and cost per function. Transistor scaling has slowed recently, however, due to fundamental limits leading to increases in power density. In this seminar, I will discuss alternative switching device designs that can potentially overcome the energy-efficiency limitations of CMOS technology to help usher in the Age of Ubiquitous Computing.
About Computing Sciences at Berkeley Lab
The Lawrence Berkeley National Laboratory (Berkeley Lab) Computing Sciences organization provides the computing and networking resources and expertise critical to advancing the Department of Energy's research missions: developing new energy sources, improving energy efficiency, developing new materials and increasing our understanding of ourselves, our world and our universe.
ESnet, the Energy Sciences Network, provides the high-bandwidth, reliable connections that link scientists at 40 DOE research sites to each other and to experimental facilities and supercomputing centers around the country. The National Energy Research Scientific Computing Center (NERSC) powers the discoveries of 6,000 scientists at national laboratories and universities, including those at Berkeley Lab's Computational Research Division (CRD). CRD conducts research and development in mathematical modeling and simulation, algorithm design, data storage, management and analysis, computer system architecture and high-performance software implementation. NERSC and ESnet are DOE Office of Science User Facilities.
Lawrence Berkeley National Laboratory addresses the world's most urgent scientific challenges by advancing sustainable energy, protecting human health, creating new materials, and revealing the origin and fate of the universe. Founded in 1931, Berkeley Lab's scientific expertise has been recognized with 13 Nobel prizes. The University of California manages Berkeley Lab for the DOE’s Office of Science.
DOE’s Office of Science is the single largest supporter of basic research in the physical sciences in the United States, and is working to address some of the most pressing challenges of our time. For more information, please visit science.energy.gov.