Latest Version of IMG Genome Analysis Tool Released
September 1, 2005
DOE has released an enhanced version of the Integrated Microbial Genomes (IMG) data management system jointly developed by the Biological Data Management and Technology Center (BDMTC) in CRD and the Joint Genome Institute (JGI). The new version, IMG 1.2, contains 270 additional public genomes and nine (four finished, five draft) new JGI genomes, bringing the total number of genomes in IMG to 618 (318 bacterial, 25 archaeal, 15 eukaryotic, 260 bacterial phage), 40 of which are fin- ished and 80 of which are draft genomes sequenced by DOE’s JGI. IMG 1.2 enables users to add annotations to IMG as well as to save the results of their analysis of organisms and genes. IMG 1.2 also features enhanced compara- tive analysis capabilities. Since its initial release in March 2005, IMG has gained increasing recognition in the scientific community. “IMG is invaluable for comparative genomic analyses,” said Mark A. Schell, professor in the Department of Microbiology and Plant Pathology at the University of Georgia. “My laboratory uses it all the time and I will use it in the classes I teach this fall.” Developed as a community resource, IMG will integrate JGI’s microbial genome data with publicly available microbial genome data, and thus provide a powerful com- parative context for microbial genome analysis. The BDMTC, headed by Victor Markowitz, was established in January 2004 to serve as a source of expertise in and provide support for data management and bioinfor- matics tool development projects at the Joint Genome Institute (JGI), Life Sciences and Physical Biosciences Divisions at LBNL, Biomedical Centers at UCSF, and other similar organizations in the Bay Area.
About Computing Sciences at Berkeley Lab
The Lawrence Berkeley National Laboratory (Berkeley Lab) Computing Sciences organization provides the computing and networking resources and expertise critical to advancing the Department of Energy's research missions: developing new energy sources, improving energy efficiency, developing new materials and increasing our understanding of ourselves, our world and our universe.
ESnet, the Energy Sciences Network, provides the high-bandwidth, reliable connections that link scientists at 40 DOE research sites to each other and to experimental facilities and supercomputing centers around the country. The National Energy Research Scientific Computing Center (NERSC) powers the discoveries of 7,000-plus scientists at national laboratories and universities, including those at Berkeley Lab's Computational Research Division (CRD). CRD conducts research and development in mathematical modeling and simulation, algorithm design, data storage, management and analysis, computer system architecture and high-performance software implementation. NERSC and ESnet are Department of Energy Office of Science User Facilities.
Lawrence Berkeley National Laboratory addresses the world's most urgent scientific challenges by advancing sustainable energy, protecting human health, creating new materials, and revealing the origin and fate of the universe. Founded in 1931, Berkeley Lab's scientific expertise has been recognized with 13 Nobel prizes. The University of California manages Berkeley Lab for the DOE’s Office of Science.
DOE’s Office of Science is the single largest supporter of basic research in the physical sciences in the United States, and is working to address some of the most pressing challenges of our time. For more information, please visit science.energy.gov.