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LBNL Speaker Series in Washington to Feature CRD Expertise

January 1, 2005

Beginning in February, scientists from CRD will launch a series of presentations at Berkeley Lab’s project office in Washington, D.C. The goal of the series is to better inform the Washington research community about the achievements and expertise of LNBL staff. The LBNL office is located at 901 D Street, SW, Suite 950. The office is in the Aerospace Center, across D Street from L’Enfant Plaza. Directions to the office can be found at <http://www.LBL.gov/Washington/wash-map-page.html>.

Wes Bethel, leader of the Visualization Group in CRD, will give the first talk at 9 a.m. Thursday, Feb. 17. His presentation is entitled, “Finding the Unknown in a Sea of Data: Leveraging Human Intuition with Scientific Visual Data Analysis.”

In his talk, Bethel will describe several approaches to help researchers tackle the problem of detecting patterns in their increasingly complex data and possibly even finding the unexpected. One example is ProteinShop, a software application used for predicting the 3D shape of proteins from amino acid sequences. ProteinShop takes advantage of human intuition to accelerate the protein structure prediction process, thereby reducing the time required from weeks to hours. Another example is a combination of visualization technologies and data management to produce what is known as "query-driven" visualization. The main idea is to perform intelligent, user-guided selection to find and analyze only the "interesting data," rather than a brute force method to perform analysis on the entire dataset.

The March presentation will feature Victor Markowitz talking about the Biological Data Management and Technology Center (BDMTC). Markowitz’ talk will be at 9 a.m. Friday, March 11. Before rejoining the Lab in January 2004, Markowitz was CIO and Senior VP, Data Management Systems at Gene Logic, where he was responsible for the development and deployment of the data management and analysis platform for the company's gene expression data. Prior to joining Gene Logic in 1997, he was a staff scientist at LBNL, where he led the development of data management tools applied to biological databases.

The BDMTC is based on the premise that effectively addressing biological data management challenges requires consolidating data management and system development expertise in a central core. Biological data management involves data generation and acquisition, data modeling, data integration and data analysis. Data management challenges are posed by increasing amounts of experimental data generated by life science applications, difficulty of qualifying data generated using inherently imprecise tools and techniques, and complexity of integrating data residing in diverse and poorly correlated repositories. Biological data management systems in academic settings such as LBNL are developed with minimal or no user and system analysis, without following system development practices, and without considering system evolution, maintenance and scalability.

This presentation will discuss the main challenges of biological data management, the problems encountered by academic groups in addressing these challenges, the rationale for BDMTC, its activities to date and future plans.

For more information about the series, contact Jon Bashor at JBashor@lbl.gov.

About Computing Sciences at Berkeley Lab

The Lawrence Berkeley National Laboratory (Berkeley Lab) Computing Sciences organization provides the computing and networking resources and expertise critical to advancing the Department of Energy's research missions: developing new energy sources, improving energy efficiency, developing new materials and increasing our understanding of ourselves, our world and our universe.

ESnet, the Energy Sciences Network, provides the high-bandwidth, reliable connections that link scientists at 40 DOE research sites to each other and to experimental facilities and supercomputing centers around the country. The National Energy Research Scientific Computing Center (NERSC) powers the discoveries of 7,000-plus scientists at national laboratories and universities, including those at Berkeley Lab's Computational Research Division (CRD). CRD conducts research and development in mathematical modeling and simulation, algorithm design, data storage, management and analysis, computer system architecture and high-performance software implementation. NERSC and ESnet are Department of Energy Office of Science User Facilities.

Lawrence Berkeley National Laboratory addresses the world's most urgent scientific challenges by advancing sustainable energy, protecting human health, creating new materials, and revealing the origin and fate of the universe. Founded in 1931, Berkeley Lab's scientific expertise has been recognized with 13 Nobel prizes. The University of California manages Berkeley Lab for the DOE’s Office of Science.

DOE’s Office of Science is the single largest supporter of basic research in the physical sciences in the United States, and is working to address some of the most pressing challenges of our time. For more information, please visit science.energy.gov.