Latest Integrated Microbial Genomes (IMG) Data Management System Update Release
DOE Joint Genome Institute to Host September IMG Workshop
December 4, 2008
DOE JGI Public Affairs Manager
WALNUT CREEK, CA--Version 2.4 of the Integrated Microbial Genomes (IMG) data management system, a resource provided to the scientific community for microbial genome data analysis, has now been released. Hosted by the U.S. Department of Energy Joint Genome Institute (DOE JGI), IMG has built a popular following as reflected in the overwhelming response to IMG workshops offered in Spring 2008, now full. DOE JGI has added a fall session, September 15-19, 2008. Registration is now open at http://www.jgi.doe.gov/meetings/mgm/.
IMG 2.4's content has been updated with new microbial genomes from the Version 25 release of the National Center for Biotechnology Information (NCBI) Reference Sequence (RefSeq). IMG 2.4 also contains a total of 3,637 genomes consisting of 818 bacterial, 50 archaeal, and 40 eukaryotic genomes; 2,042 viruses and bacterial phages; and 687 plasmids. Among these genomes, there are 3,334 finished and 303 draft genomes, of which 256 (185 finished and 71 draft) are genomes sequenced by DOE JGI.
The IMG native controlled vocabulary of functional terms and pathways has been extended to 4,148 terms and 524 pathways, with 546,169 genes characterized using IMG terms. Functional annotation of genomes in IMG has been further enhanced through the computation of fused genes and by filling in various RNA genes missing from the original genome data sets.
IMG's user interface has been reorganized and enhanced to improve ease of use. IMG's user manual, UsingIMG, has been revised and extended. For more details, see What's New and Using IMG at http://img.jgi.doe.gov/.
IMG is a collaborative effort between DOE JGI and the Lawrence Berkeley National Laboratory Biological Data Management and Technology Center (BDMTC). IMG is updated on a quarterly basis with new public and DOE JGI genomes. The next IMG update is scheduled for March, 2008.
The U.S. Department of Energy Joint Genome Institute, supported by the DOE Office of Science, unites the expertise of five national laboratories -- Lawrence Berkeley, Lawrence Livermore, Los Alamos, Oak Ridge, and Pacific Northwest -- along with the Stanford Human Genome Center to advance genomics in support of the DOE missions related to clean energy generation and environmental characterization and cleanup. DOE JGI's Walnut Creek, CA, Production Genomics Facility provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges.
About Computing Sciences at Berkeley Lab
The Lawrence Berkeley National Laboratory (Berkeley Lab) Computing Sciences Area provides the computing and networking resources and expertise critical to advancing Department of Energy Office of Science (DOE-SC) research missions: developing new energy sources, improving energy efficiency, developing new materials, and increasing our understanding of ourselves, our world and our universe.
ESnet, the Energy Sciences Network, provides the high-bandwidth, reliable connections that link scientists at 40 DOE research sites to each other and to experimental facilities and supercomputing centers around the country. The National Energy Research Scientific Computing Center (NERSC) powers the discoveries of 7,000-plus scientists at national laboratories and universities, including those at Berkeley Lab's Computational Research Division (CRD). NERSC and ESnet are both Department of Energy Office of Science National User Facilities. The Computational Research Division (CRD) conducts research and development in mathematical modeling and simulation, algorithm design, data storage, management and analysis, computer system architecture and high-performance software implementation. NERSC and ESnet are Department of Energy Office of Science User Facilities.
Berkeley Lab addresses the world's most urgent scientific challenges by advancing sustainable energy, protecting human health, creating new materials, and revealing the origin and fate of the universe. Founded in 1931, Berkeley Lab's scientific expertise has been recognized with 13 Nobel prizes. The University of California manages Berkeley Lab for the DOE’s Office of Science.
The DOE Office of Science is the United States' single largest supporter of basic research in the physical sciences and is working to address some of the most pressing challenges of our time. For more information, please visit science.energy.gov.